Feel free to also check out my Google Scholar page.

Preprints

Evolution and Diversification of the Aposematic Poison Frog, Oophaga pumilio, in Bocas del Toro

Aguilar-Gómez. In Review.

Steppe Ancestry in western Eurasia and the spread of the Germanic Languages

McColl et al. In Review.

2024

Inference and applications of ancestral recombination graphs

Nielsen, Vaughn, and Deng 2024. Nature Reviews Genetics.

The selection landscape and genetic legacy of ancient Eurasians

Irving-Pease, Refoyo-Martínez, William Barrie, Ingason, Pearson, and Fischer et al. 2024. Nature.

100 ancient genomes show repeated population turnovers in Neolithic Denmark

Allentoft, Sikora, and Fischer et al. 2024. Nature.

Population genomics of post-glacial western Eurasia

Allentoft, Sikora, Refoyo-Martínez, Irving-Pease, Fischer, Barrie, and Ingason et al. 2024. Nature.

Fast and accurate estimation of selection coefficients and allele histories from ancient and modern DNA

Vaughn and Nielsen 2024. Molecular Biology and Evolution.

2023

Bayesian inference of admixture graphs on Native American and Arctic populations

Nielsen and Vaughn et al. 2023. PLOS Genetics.

2022

Evaluation of methods for estimating coalescence times using ancestral recombination graphs

Brandt et al. 2022. Genetics.

2019

Trait-based modeling of multihost pathogen transmission

Truitt et al. 2019. The American Naturalist.

Maximum likelihood estimation of fitness components in experimental evolution

Liu and Champer et al. 2019. Genetics.